species:   Artha
pid:       MI0031739
parent:    ath-MIR8167d
paralog:   
locus:     5:7057157-7057231
matures:   ['AGAUGUGGAGAUCGUGGGGAUG', 'UCUUUGAGAUUUUACACAGUAGUC']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 5:7057157-7057231

9 out of bounds
14 alignments
12 proper strand
10 stranded perfect matches

         ****************************** **************************         
CAUCUUUGAGAUUUUACACAGUAGUCAUGGAGUUUUUGGAAGAGAGAAAGUGGAGAUGUGGAGAUCGUGGGGAUG
((((((((.((((((.((((....((((....(((((.....)))))..))))...)))))))))).))))))))
-----------------------------------------------------AGAUGUGGAGAUCGUGGGGAUG l=22 a=0 c
--UCUUUGAGAUUUUACACAGUAGUC------------------------------------------------- l=24 a=0 c*
------------------------------------------AGAGAAAGUGGAGAUGUGGAGAUC--------- l=24 a=2 ma
-----------UUUUACACAGUAGUCAUGGAGUUUUUGG------------------------------------ l=28 a=0 ma*

-------------------------------------GGgAGAGAGAAAGUGGAGAUGU---------------- l=22 a=1 
-------------------------------------GGAAGAGAGAAAGUGGAGAUGUGG-------------- l=24 a=1 
-----------------------------------------GAGAGAAAGUGGAGAUGUGGAG------------ l=22 a=1 
-----------------------------------------GAGAGAAAGUGGAGAUGUGGAGgUC--------- l=25 a=1 
------------------------------------------AGAGAAAGUGGAGAUGUGGAGAUC--------- l=24 a=2 (ma)
---------------------------------------------GAAAGUGGAGAUGUGGAGAUCGU------- l=23 a=1 
----------------------------------------------AAAGUGGAGAUGUGGAGAUC--------- l=20 a=1 
----------------------------------------------AAAGUGGAGAUGUGGAGAUCGU------- l=22 a=1 
------------------------------------------------AGUGGAGAUGUGGAGAUCGUG------ l=21 a=1 
-------------------------------------------------GUGGAGAUGUGGAGAUCGUG------ l=20 a=1 
----------------------------------------------------GAGAUGUGGAGAUCGUGGGGAUG l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101000
fn-011
